Source: ALL
Disease Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
CUI: C0024790
Disease: Paroxysmal nocturnal hemoglobinuria
Paroxysmal nocturnal hemoglobinuria
0.010 AlteredExpression disease BEFREE We sequenced BST-1 of CD157-negative probands that are not suffering from PNH and expressed wild type and a discovered variant form of CD157 in HEK293 cells. 29360268 2018
CUI: C0235946
Disease: Cerebral atrophy
Cerebral atrophy
0.110 GeneticVariation disease BEFREE Other that the common symptoms related to PGAP1 mutations including non-progressive psychomotor retardation, neonatal feeding problems, microcephaly and brain atrophy these patients displayed severely delayed myelination and recurrent apneas thereby widing the clinical spectrum associated with such mutations. 27206732 2016
CUI: C0003578
Disease: Apnea
Apnea
0.010 Biomarker phenotype BEFREE A symptom not described in PGAP1 related disorder before but prominent in the siblings were recurrent apnea especially during sleep that persisted at least until age 2 years. 27206732 2016
CUI: C0266617
Disease: Congenital anomaly of face
Congenital anomaly of face
0.010 Biomarker group BEFREE Recently mutations in the PGAP1 gene that codes for PGAP1, a protein localized in the endoplasmic reticulum responsible for the first step of the remodeling of glycosylphosphatidylinositol was linked to a disorder characterized by psychomotor retardation and facial dysmorphism. 27206732 2016
CUI: C1854919
Disease: Severe psychomotor retardation
Severe psychomotor retardation
0.010 GeneticVariation phenotype BEFREE Compound heterozygous variants in PGAP1 causing severe psychomotor retardation, brain atrophy, recurrent apneas and delayed myelination: a case report and literature review. 27206732 2016
CUI: C4551584
Disease: Brain atrophy
Brain atrophy
0.010 GeneticVariation disease BEFREE Other that the common symptoms related to PGAP1 mutations including non-progressive psychomotor retardation, neonatal feeding problems, microcephaly and brain atrophy these patients displayed severely delayed myelination and recurrent apneas thereby widing the clinical spectrum associated with such mutations. 27206732 2016
CUI: C3810365
Disease: Central visual impairment
Central visual impairment
0.120 Biomarker disease BEFREE After classification, variants in four genes known to be associated with CVI (AHDC1, NGLY1, NR2F1, PGAP1) in 5 patients (20%) were identified, establishing a conclusive genetic diagnosis for CVI. 26350515 2016
MENTAL RETARDATION, AUTOSOMAL RECESSIVE 42
0.600 Biomarker disease GENOMICS_ENGLAND Loss of function of PGAP1 as a cause of severe encephalopathy identified by Whole Exome Sequencing: Lessons of the bioinformatics pipeline. 26050939 2015
CUI: C0085584
Disease: Encephalopathies
Encephalopathies
0.020 Biomarker group BEFREE The present report not only illustrates the possible influence of specific filtering settings on the results of WES but also confirms PGAP1 as a cause of severe encephalopathy. 26050939 2015
CUI: C3714756
Disease: Intellectual Disability
Intellectual Disability
0.120 GeneticVariation group BEFREE In conclusion, we report novel PGAP1 variants in a boy with CVI and ID and a proven functional loss of PGAP1 and show, to our knowledge, for the first time this genetic association with CVI. 25804403 2015
CUI: C3810365
Disease: Central visual impairment
Central visual impairment
0.120 GeneticVariation disease BEFREE In conclusion, we report novel PGAP1 variants in a boy with CVI and ID and a proven functional loss of PGAP1 and show, to our knowledge, for the first time this genetic association with CVI. 25804403 2015
CUI: C0026838
Disease: Muscle Spasticity
Muscle Spasticity
0.110 GeneticVariation phenotype BEFREE Homozygous variants in PGAP1 (post-GPI attachment to proteins 1) have recently been identified in two families with developmental delay, seizures and/or spasticity. 25804403 2015
CUI: C0557874
Disease: Global developmental delay
Global developmental delay
0.110 GeneticVariation disease BEFREE Homozygous variants in PGAP1 (post-GPI attachment to proteins 1) have recently been identified in two families with developmental delay, seizures and/or spasticity. 25804403 2015
CUI: C0015526
Disease: Factor XII Deficiency
Factor XII Deficiency
0.010 GeneticVariation disease BEFREE Here we performed whole-exome sequencing in an individual with cerebral visual impairment (CVI), intellectual disability (ID), and factor XII deficiency and revealed compound heterozygous variants in PGAP1, c.274_276del (p.(Pro92del)) and c.921_925del (p.(Lys308Asnfs*25)). 25804403 2015
Congenital Disorders of Glycosylation
0.010 Biomarker group BEFREE PGAP1 is a member of the glycosylphosphatidylinositol anchor biosynthesis and remodeling pathway and defects in this pathway are a subclass of congenital disorders of glycosylation. 25804403 2015
CUI: C0424605
Disease: Developmental delay (disorder)
Developmental delay (disorder)
0.010 GeneticVariation phenotype BEFREE Homozygous variants in PGAP1 (post-GPI attachment to proteins 1) have recently been identified in two families with developmental delay, seizures and/or spasticity. 25804403 2015
CUI: C3714756
Disease: Intellectual Disability
Intellectual Disability
0.120 GeneticVariation group BEFREE Null mutation in PGAP1 impairing Gpi-anchor maturation in patients with intellectual disability and encephalopathy. 24784135 2014
CUI: C0085584
Disease: Encephalopathies
Encephalopathies
0.020 GeneticVariation group BEFREE We performed homozygosity mapping and exome sequencing in a family with encephalopathy and non-specific ARID and identified a homozygous 3 bp deletion (p.Leu197del) in the GPI remodeling gene PGAP1. 24784135 2014
Autosomal recessive spastic paraplegia type 67
0.300 GermlineCausalMutation disease ORPHANET Exome sequencing links corticospinal motor neuron disease to common neurodegenerative disorders. 24482476 2014
MENTAL RETARDATION, AUTOSOMAL RECESSIVE 42
0.600 GeneticVariation disease CLINVAR PGAP1 knock-out mice show otocephaly and male infertility. 17711852 2007
Precursor B-cell lymphoblastic leukemia
0.010 AlteredExpression disease BEFREE BST-1 expression was enhanced in rheumatoid arthritis patient-derived bone marrow stromal cell lines that were previously shown to have an enhanced ability to support the growth of a pre-B-cell line as compared with stromal cell lines derived from healthy donors. 8202488 1994
MENTAL RETARDATION, AUTOSOMAL RECESSIVE 42
0.600 CausalMutation disease CLINVAR
MENTAL RETARDATION, AUTOSOMAL RECESSIVE 42
0.600 Biomarker disease CTD_human
CUI: C0079541
Disease: Holoprosencephaly
Holoprosencephaly
0.200 Biomarker disease MGD
CUI: C3714756
Disease: Intellectual Disability
Intellectual Disability
0.120 Biomarker group HPO